https://social.technet.microsoft.com/Forums/en-US/b57e74af-48c7-4e3c-98c4-baaf3e1e3445/differences-between-selfservice-portal-and-app-controller?forum=appcontroller
App Controller is a super-set of the functionality in the self-service portal. With App Controller you can:
- View and deploy virtual machines and services (the self-service portal shows only virtual machines)
- View virtual machines and services from more than 1 VMM management server (providing they are in the same trust boundary)
- Upgrade services
- Copy files to/from VMM libraries
- View, deploy and upgrade services running in Windows Azure
- Use Active Directory users and groups to provide access to Windows Azure subscriptions
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